, 1980) and a skin lotion used by patients in a haematology–oncology and bone marrow transplant wards (Orth et al., 1996; Itin et al., 1998). The first aim of the current study was to clarify the phylogenetic position of Palbociclib clinical trial P. lilacinus and to find out whether purple-spored species with morphologies similar to P. lilacinus form a monophyletic assemblage within the Hypocreales. The second aim was to determine whether there are clades within P. lilacinus, which only comprise vertebrate or invertebrate pathogens. Towards this aim, translation elongation factor
1-α (TEF) gene and internal transcribed spacer (ITS) sequences from strains obtained from clinical specimens were compared with those from isolates of soil, insects and indoor environments or used as biocontrol agents. Strains isolated from various this website clinical specimens and hospital environments are emphasized in our selection of P. lilacinus isolates. These strains are supplemented with isolates from various other substrates (soil, indoor environment, insects and nematodes), and originate from various collections worldwide. An overview of isolates and sources is shown in Supporting information, Table S1. A selection of isolates (Table S1) were grown for 7–14 days
on malt extract agar (MEA) and were incubated in darkness at 25, 30 and 37 °C. Furthermore, three-point inoculations were made on MEA and incubated for 7 days at 25 °C in darkness (medium compositions in Samson et al., 2010). After incubation, colony diameters were measured and cultures were investigated with a light microscope. Isolates were grown on MEA for 5–10 days, incubated at 25 °C.
Total DNA was C-X-C chemokine receptor type 7 (CXCR-7) extracted using the Ultraclean™ Microbial DNA isolation Kit (MBio, Solana Beach, CA) according the manufacturer’s instructions. DNA sequences of the 18S rRNA gene were obtained from the GenBank database, and amplification of the ITS regions and a part of the TEF gene was preformed as described by Houbraken et al. (2011) and Dodd et al. (2002), respectively. The ITS and TEF dataset was combined and maximum likelihood analysis was performed using raxml version 7.2.8. Each dataset was treated as a separate partition. Two Cryptococcus neoformans sequences (GenBank nos AJ560317 and AJ560313) were used to root the 18S rRNA gene phylograms. The phylogram based on combined TEF and ITS sequences were rooted with Paecilomyces marquandii DTO 145E5. The sequences used for building the 18S rRNA gene phylogram were downloaded from the NCBI GenBank database. Newly generated sequences are deposited in GenBank under accession numbers HQ842812–HQ842841. The phylogenetic analysis of the 18S rRNA gene region confirms the data of Luangsa-ard et al. (2004), showing the polyphyletic nature of Paecilomyces.