In G. metallireducens and G. sulfurreducens, however, the β2 gene trpB2 (Gmet_2493 = GSU2379, 60% identical to the T. maritima see more protein ) is the penultimate gene of the predicted trp operon and the trpB1 (Gmet_2482 = GSU2375, 66% identical to the Acinetobacter calcoaceticus protein ) and trpA (Gmet_2477 = GSU2371, 47% identical to the Azospirillum brasilense protein ) genes are separated from the 3′ end of the operon and from each other by three or more intervening genes, most of which are not conserved MLN8237 cost between the two genomes (not shown). Next to the trpB2 gene of G. metallireducens is one of 24 pairs of a conserved nucleotide motif
(Additional file 7: Figure S3, Additional file 5: Table S4) hypothesized to bind an unidentified global regulator protein. Other, evolutionarily related paired sites where another unidentified global regulator may bind (Additional file 8: Figure S4, Additional file 5: Table S4) are found in 21 locations. Between the proBA genes of G. metallireducens, encoding the first two enzymes of proline biosynthesis (Gmet_3198-Gmet_3199 = GSU3212-GSU3211,
41% and 45% identical to the E. coli enzymes ), is one of eight pairs of predicted binding sites for yet another unidentified global regulator (Additional file 9: Figure S5, Additional file 5: Table S4). In G. sulfurreducens, the space between proBA is occupied by a different conserved nucleotide sequence (not shown), LY2874455 manufacturer found only in four other places in the same genome. Overall, a comparison of the two genomes offers insight into unique features of amino acid biosynthesis and its regulation that deserve further study. Nucleotide metabolism Differences in nucleotide metabolism were identified in the two genomes. G. metallireducens
has acquired a possibly redundant large subunit of carbamoyl-phosphate Methamphetamine synthetase (Gmet_0661, 50% identical to the P. aeruginosa protein ) in addition to the ancestral gene (Gmet_1774 = GSU1276, 65% identity to P. aeruginosa), Both genomes encode a second putative thymidylate kinase (Gmet_3250 = GSU3301) distantly related to all others, in addition to the one found in other Geobacteraceae (Gmet_2318 = GSU2229, 41% identical to the E. coli enzyme ). G. sulfurreducens has evidently lost the purT gene product of G. metallireducens and several other Geobacteraceae (Gmet_3193, 58% identical to the E. coli enzyme ), which incorporates formate directly into purine nucleotides instead of using the folate-dependent purN gene product (Gmet_1845 = GSU1759, 46% identical to the E. coli enzyme ). Carbohydrate metabolism Comparative genomics indicates that, similar to most Geobacter species, G.